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生物技術在九孔及吳郭魚之應用研究

  • 日期:98-04-17
  • 年度:2007
  • 領域:生物技術領域
  • 主持人:林金榮
  • 研究人員:林金榮

本年度之計畫目標包括(1)九孔及吳郭魚的微隨體基因標誌篩選;(2)建立吳郭魚TsB及TsR品系的第二世代;(3)分析吳郭魚基因標誌與形質的關聯性;(4)九孔成長形質性狀歸群分析;(5)建立九孔隻基因標誌質體基因資料庫;及(6)開發九孔主要病原菌快速檢測套組之雛型。在吳郭魚方面,現已建立兩個吳郭魚標準模式魚品種並建立家系圖,一個TSB;另一個TSR。TSB品種的塩度適應特性,塩度55psu以下正常生長,45 psu以下可繁殖並產出小魚。TSR品種的體長特性,F1:76.4±8.5cm,F2:73.6±18.55cm;卡方分析 (Chi-square test) TSR品種的體色表型有三型。逐代以遺傳相似矩陣及未加權算數平均法(UPGMA:Unweight Pair-Grouping Method with Arithmetic mean),群集分析TSR品種,當遺傳相似係數0.82時,其子代可區分為五群,在體色方面有三種表現型。在九孔方面,利用RAPD技術對7個來源不同九孔群體,(一)養殖群體:台東縣兩場(TC1和TC2)、宜蘭縣三場(YC1, YC2 和YC3),(二)野生群體:花蓮縣的水璉、磯碕(HC1)和鹽寮(HC2)的遺傳變異進行分析。篩選6條(p3、p5、p7、p8、p9及p12)產物清楚且重覆性高的逢機引子(random amplified polymorphic DNA, RAPD)共檢測出61條擴增帶。在養殖群體部分,除Y3群體外,其他4個群體的等位對偶基因個數(na) 1.8033±0.4008~1.8852±0.3214;有效的等位對偶基因個數(ne) 1.5023±0.3524~1.6469±0.3423;基因歧異度(h) 0.2927±0.1830~0.3599±0.1638;遺傳多樣性指數(I) 0.4360±0.2522~0.5233±0.2210;多型性擴增帶數(nL) 49~54及多型性擴增帶比率(PL)80.33%~88.52%。在2個野生群體部分(na) 1.8689±0.3404~1.9508±0.2180;(ne) 1.6677±0.3456~1.7397±0.2846;(h) 0.3659±0.1717~0.4048±0.1298;(I) 0.5268±0.2356~0.5823±0.1703;(nL) 53~58及 (pL) was 86.89%~95.08%。經由上述結果及未加權算數平均法(unweighted pair group method analysis , UPGMA)相似性係數之數值矩陣,可將九孔分成台東(Taitung)、花蓮(Hau)和宜蘭(Yilan) 三群,其中花蓮的野生九孔群體其遺傳變異、基因多型性及等位基因個數均明顯大於養殖九孔。此外,九孔主要病原菌(溶藻弧菌)快速檢測套組亦已完成原型之開發,期能協助九孔及吳郭魚產業之選種、育種,並減少魚病藥物之濫用誤用,使台灣的水產養殖能成為一個與環境友善共存之永續產業。

研究報告摘要(英)


The achievements of the project this year are (1) screening microsatellite DNA markers of tilapia and small abalone; (2) setting up the second generation of TsB and TsR tilapia; (3) analyzing the relationship between the gene markers and characters of tilapia; (4) clustering analysis for the growth rate of small abalone; (5) setting up the gene marker plasmid library of small abalone, and (6) developing the model of fast detection kit for the pathogens of small abalone. In tilapia, 30 samples, three month-old, randomly sampled from generation of F1, F2 and F3 each full-sibling, measuring the body length and weight. The body length and weight of F1 were 76.42±8.51mm and 7.19±3.29g; F2:73.59±18.55mm and 7.19±3.29g; F3:70.14±4.32mm and 4.05±1.79g. Detected by t-test, both body length and weight were no difference between F1 and F2. The body length was no difference between F2 and F3, however, the body weight was difference (p<0.01). Both body length and weight were difference between F1 and F3 (p<0.005). Microsatellite primer fingerprinting was carried out to screening the color-associated DNA sequence for color-associated in tilapia. 20 primers, from NCBI, were used for PCR. Two of these primers (Red-1 & Red-13) produced specific marker (200 bp and 1300 bp) only found in tested red color tilapia of TsR line but none found in black color tilapia of TsB line. This result showed that the color-associated DNA marker will be effectively selected color marker for tilapia breeding in the future. In small abalone, utilizing RAPD technique was applied to assess the genetic variation of small abalone, Haliotis diversicolor, (1) there were five farmer strains, two of them were from the county of Taitung (TC1 and TC2) and the others from the county of Yilan (YC1, YC2 and YC3), (2) wild abalone were from the coast of Shueilian-Jichi (HW1) and Yanliao (HW2) of Hualian County, respectively. Six clear and reproducible random primers (p3, p5, p7, p8, p9 and p12) were used and 61 bands were generated. The results showed that in farmer strains the observed number of alleles (na) was 1.8033±0.4008~1.8852±0.3214; effective number of alleles (ne) was 1.5023±0.3524~1.6469±0.3423; gene diversity (h) was 0.2927±0.1830~0.3599±0.1638; Shannon's Information index (I) was 0.4360±0.2522~0.5233±0.2210, the number of polymorphic loci (nL) was 49~54, and the percentage of polymorphic loci (pL) was 80.33%~88.52%, besides Y3 population. In wild abalone the (na) was 1.8689±0.3404~1.9508±0.2180; (ne) was 1.6677±0.3456~1.7397±0.2846; (h) was 0.3659±0.1717~0.4048±0.1298; (I) was 0.5268±0.2356~0.5823±0.1703, (nL) was 53~58, and (pL) was 86.89%~95.08%. Based on the results and through un-weighted pair group method analysis (UPGMA), these small abalone can be divided into three subgroups: Taitung, Haulian, and Yilan. Compared to the farmer strains, the wild abalone from Haulian displayed a greater genetic variation, polymorphism and number of alleles. In addition, the prototype of fast detection kit of Vibrio alginolyticus has been developed. We expect the achievements of this project can assist the industry of tilapia and small abalone aquaculture in stock selection and artificial breeding, can keep away from the abuse or misuse of medicines, and to male aquaculture in Taiwan to be a sustainable environment-friendly industry.