The stereogram technology had been used to develop an underwater fish size measuring system in this program. The body length and body height of living fish can be conveniently, rapidly derived by calculating the paired photos. For the length of 30-50 cm suspended fish, the measuring results showed that the average accuracy was about 96% comparing to the real body length. For living yellowfin tuna cultured in the water tank, the average accuracy was about 92%, related to the swimming posture of fish. Therefore, the results show that this system can be successfully used to measure the body length and body height of living fish in water.